Enabled by hCoV-19 data shared via GISAID (examples)

CoronaTrend

The University of Hong Kong (Hong Kong)
Prevalence of different mutations across different lineages

assayM 

King Abdullah University of Science & Technology (Saudi Arabia)
Track sensitivity of RT-PCR primers on COVID-19 variants 

Wisconsin Genomic Dashboard

Wisconsin Department of Health Services (USA)
Summary reports on sequencing and variants of SARS-CoV-2 (hCoV-19)

CoV-Spectrum

Computational Evolution Group, ETH Zurich (Switzerland)
Fully interactive platform to explore and monitor variants of SARS-CoV-2

CoVerage

Helmholtz Centre for Infection Research (Germany)
Epidemiological dynamics of SARS-CoV-2 lineages

CovidTag 

IrsiCaixa AIDS Research Institute (Spain)
Average weekly hCoV-19 variants counts in Spain and Regions

CoVGlobe

The Francis Crick Institute (United Kingdom)
Aggregate three-week rolling averages of lineages in different locations

Regeneron COVID-19 Dashboard

Molecular Profiling & Data Science and Bioinformatics Core Services (USA)
Track current and emerging SARS-CoV-2 variants with customizable visualizations

Mutation Situation Reports

The Andersen Lab at Scripps Research (USA)
Tracking the prevalence of several lineages or sets of mutations within the hCoV-19 genome

CoVariants

University of Bern (Switzerland)
SARS-CoV-2 variants and mutations of interest

Covid-Miner

Regina Elena National Cancer Institute (Italy)
Detect the emergence and geographical distribution of hCoV-19 Spike protein genetic varian
ts

CoVizu

Western University (Canada)
Near real-time visualization of hCoV-19 genomic variation

COVID-19 CoV Genetics Browser

Broad Institute of MIT and Harvard (USA)
Track transmission, evolution, emergence, immune interactions, diagnostics, therapeutics & vaccines

NAAT Amplicons

European Commission (Belgium)
Performance database for diagnostic medical devices related test methods for COVID-19

Sequence Analysis Pipeline

Los Alamos National Lab (USA)
Analyses of accruing mutations geographically and over time, with an emphasis on Spike protein

CoV-GLUE

University of Glasgow (United Kingdom)
Amino acid variation database of amino acid replacements, insertions and deletions

Genomic Signature Analysis

CSIRO (Australia)
Representation of the similarity of viral genomes in 2-dimensional space

Geographic Mutation Tracker

KAUST (Saudi Arabia)
COVID-19 virus geographic mutation tracker and visualization tool

Interactive Real-Time Mutation Tracker

Michigan State University (USA)
Explore and animate mutations over time

Global Testing and Genomic Variability

Lebanese American University (Lebanon)
Identification and tracking of mutations and variations across time and geographies

Spike Protein Mutations Monitoring

KAUST (Saudi Arabia)
Visualization of frequency of point mutations in the S protein amino acid sequences

GESS

Indiana University (USA)
Genome position / Region / Area / Concurrence search and SNV birth query

Status of Detection Systems

University of Turin (Italy)
Diagnostic detection of 2019-nCoV by real-time RT-PCR amplification

 
Open AccessTwitter